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Pathways

56 pathways across 7 categories. Open any one for its full ordered reaction list, regulation table and clinical notes.

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PW-016 unreviewed

Transamination

Amino Acid & Nitrogen Metabolism Amphibolic (nitrogen handling) 5 steps
Amino acid + alpha-ketogl… alpha-Keto acid + glutama…

Transamination is the reversible transfer of an α-amino group from an amino acid to an α-keto acid. It funnels nitrogen from most amino acids onto glutamate, while producing carbo…

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PW-018 unreviewed

Urea Cycle

Amino Acid & Nitrogen Metabolism Anabolic (detoxification) 5 steps
NH4+ + HCO3- + aspartate Urea + fumarate

The urea cycle converts toxic ammonia and the amino nitrogen of aspartate into urea, the principal nitrogenous waste product in humans. It is essential during amino-acid catabolis…

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PW-026 unreviewed

Purine Degradation (to Uric Acid)

Nucleotide Metabolism Catabolic 10 steps
AMP / GMP Uric acid (urate)

Humans degrade purine nucleotides to uric acid (present predominantly as urate at physiologic pH), which is excreted mainly by the kidney and, to a lesser extent, the intestine. U…

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PW-025 unreviewed

Purine Salvage Pathway

Nucleotide Metabolism Anabolic (salvage) 8 steps
Free purine bases (hypoxa… IMP, GMP, AMP

Purine salvage conserves preformed purine bases and nucleosides by reconverting them into nucleotides, thereby avoiding the high energetic cost of de novo synthesis. It is particu…

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PW-028 unreviewed

Pyrimidine Degradation

Nucleotide Metabolism Catabolic 14 steps
CMP / UMP / dTMP Beta-alanine or beta-amin…

Pyrimidine nucleotides are degraded to highly water-soluble, small metabolites rather than to a poorly soluble terminal product such as urate. Uracil yields beta-alanine, whereas …

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PW-034 unreviewed

Anaerobic Glycolysis / Lactic Acid Fermentation

Energy Metabolism & Cellular Respiration Catabolic 11 steps
Glucose 2 Lactate + 2 ATP

Anaerobic glycolysis converts glucose to pyruvate and then reduces pyruvate to lactate, regenerating cytosolic NAD+ so glycolytic ATP production can continue when mitochondrial ox…

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PW-031 unreviewed

Citric Acid Cycle (TCA / Krebs Cycle)

Energy Metabolism & Cellular Respiration Amphibolic 8 steps
Acetyl-CoA + oxaloacetate 2 CO2 + 3 NADH + 1 FADH2 …

The citric acid cycle (TCA cycle, Krebs cycle) oxidizes the acetyl group of acetyl-CoA to two molecules of CO2 while capturing reducing equivalents as NADH and FADH2 and generatin…

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PW-032 unreviewed

Electron Transport Chain (Complexes I–IV)

Energy Metabolism & Cellular Respiration Catabolic (energy transduction) 5 steps
NADH / FADH2 + O2 H2O + proton-motive force

The mitochondrial electron transport chain (ETC) transfers electrons from NADH and FADH2 to molecular oxygen through a sequence of redox carriers while using the released free ene…

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PW-048 unreviewed

Glycerol-3-Phosphate Shuttle

Energy Metabolism & Cellular Respiration Transport (redox) 2 steps
Cytosolic NADH Mitochondrial FADH2 (~1.5…

Skeletal muscle, brown adipose tissue, brain

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