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MS

Pathways

56 pathways across 7 categories. Open any one for its full ordered reaction list, regulation table and clinical notes.

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PW-019 unreviewed

Amino Acid Catabolism Overview (glucogenic vs. ketogenic amino acids; brief overview of branched-chain amino acid catabolism and phenylalanine/tyrosine catabolism as representative examples)

Amino Acid & Nitrogen Metabolism Catabolic 14 steps
Amino acid carbon skeleto… Pyruvate, acetyl-CoA/acet…

Amino-acid catabolism first removes or transfers nitrogen, then directs the carbon skeleton to a limited set of metabolic entry points. Glucogenic amino acids yield pyruvate or a …

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PW-044 unreviewed

Catecholamine Synthesis

Amino Acid & Nitrogen Metabolism Anabolic 5 steps
L-Tyrosine Dopamine -> norepinephrin…

Adrenal medulla, sympathetic neurons, CNS

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PW-022 unreviewed

Heme Biosynthesis (Porphyrin Pathway)

Amino Acid & Nitrogen Metabolism Anabolic 8 steps
Succinyl-CoA + glycine Heme (protoheme IX)

Heme biosynthesis forms protoporphyrin IX and inserts ferrous iron to generate heme, an essential prosthetic group for hemoglobin, myoglobin, cytochromes, catalases, peroxidases, …

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PW-023 unreviewed

Heme Degradation (Bilirubin Pathway)

Amino Acid & Nitrogen Metabolism Catabolic 6 steps
Heme Conjugated bilirubin -> u…

Heme degradation disposes of heme released predominantly during turnover of senescent erythrocytes and converts its tetrapyrrole ring into bilirubin for biliary excretion. Macroph…

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PW-021 unreviewed

Methionine Cycle / Transmethylation (SAM Cycle, homocysteine)

Amino Acid & Nitrogen Metabolism Amphibolic 7 steps
Methionine + ATP SAM -> methylated product…

The methionine cycle activates methionine to S-adenosylmethionine (SAM), the universal major methyl donor for DNA, RNA, protein, phospholipid, neurotransmitter, and small-molecule…

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PW-020 unreviewed

One-Carbon Metabolism (Folate Cycle)

Amino Acid & Nitrogen Metabolism Anabolic (one-carbon transfer) 10 steps
Serine / formate + tetrah… 5,10-methylene-THF, 10-fo…

The folate cycle uses tetrahydrofolate (THF) derivatives to carry and distribute one-carbon units at oxidation states ranging from methyl to formyl. These units support de novo pu…

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PW-017 unreviewed

Oxidative Deamination

Amino Acid & Nitrogen Metabolism Catabolic 3 steps
Glutamate (+ glutamine, a… alpha-Ketoglutarate + NH4+

Oxidative deamination releases the amino nitrogen of glutamate as ammonium while regenerating α-ketoglutarate. In the liver this provides mitochondrial ammonia for carbamoyl phosp…

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PW-016 unreviewed

Transamination

Amino Acid & Nitrogen Metabolism Amphibolic (nitrogen handling) 5 steps
Amino acid + alpha-ketogl… alpha-Keto acid + glutama…

Transamination is the reversible transfer of an α-amino group from an amino acid to an α-keto acid. It funnels nitrogen from most amino acids onto glutamate, while producing carbo…

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